Bioinformatics

Published by: Global Industry Analysts

Published: May. 1, 2008 - 709 Pages

Table of Contents

I. INTRODUCTION, METHODOLOGY & PRODUCT DEFINITIONS

Study Reliability and Reporting Limitations

Disclaimers

Data Interpretation & Reporting Level

Quantitative Techniques & Analytics

Product Definitions and Scope of Study

Software

Hardware

Biocontent

II. EXECUTIVE SUMMARY

1. Industry Overview

Revolution in Biology

Outlook

Analysis by Product Segment

Software

Biocontent

Hardware

Industry Structure

Industry Challenges

Consolidation- A Key to Success

2. Introduction to Bioinformatics

Bioinformatics Assumes More Comprehensive Role

Bioinformatics: Definition

Bioinformatics: History in Brief

Functions of Bioinformatics

Major End-Users of Bioinformatics

Interface of IT and Biosciences

Venture Capital and Bioinformatics

Branches Associated with Bioinformatics

Emerging Clinical Genomics Industry

Genomic Business Models

Applications of Bioinformatics

Bioinformatics: Crucial for New Drug Development

Application of Bioinformatics to Oral Genomics

Importance of IP Protection Systems in Bioinformatics

3. Insight into Bioinformatics Technology

Protein Structure and its Determination

Components of Bioinformatics

Software

Hardware

Biocontent

Proteins/ Proteomics Data and Databases

DNA Sequences and Protein Sequencing

Aligning Sequences

Databases

Nucleotide Databases

EMBL Nucleotide Sequence Database

DNA Database of Japan (DDBJ)

GenBank

Institute for Genomic Research (TIGR)

Protein Databases

SWISS-PROT

TrEMBL

IMGT/LIGM-DB

PROSITE

Design and Development of XML Bioinformatics Environment

Biopolymer Markup Language (BioML)

Bioinformatics Sequence Mark-Up Language - BSML

Genome Annotation Markup Elements (GAME)

Microarray Markup Language (MAML)

Gene Expression Markup Language (GEML™)

Hardware

Technologies Involved

Computer-Assisted Imaging, Mapping and High-Throughput Screening

Database Engineering

Computer Processing

Computational Software

4. Product Innovations/Introductions

Accelrys Rolls Out Three New Component Collections for its SciTegic Pipeline Pilot™

Agilent Technologies Unveils Gene Expression Bioinformatics System, GeneSpring GX 9.0

GeneBio and SIB Roll Out New Version of Melanie 2-D Gel Analysis Platform

InforSense to Incorporate BioWisdom’s SRS software in its Workflow Analytics Platform

BioWisdom Launches SRS 3D Technology, as a Free Software

GeneGo Integrates Cytoscape Software on its Data Analysis Platform

Applied Biosystems and Integromics Unveil Integrated Real- Time PCR Data Analysis Solution

Applied Biosystems Rolls Out Advanced DNA Sequencing Platform, The SOLiD™ System

GeneBio Introduces New Version of Phenyx Platform

TCS to Introduce Enhanced Bioinformatics Software, BioAppliance

Applied Biosystems Introduces Genotyping Service Provider Program

Applied Biosystems Launches Variant Reporter™, Genetic Variation Data Analysis Software

GeneBio Launches Online Platform of Phenyx, PhenyxOnline

InforSense Rolls Out a Statistical Genetics Solution, GenSense

U. S. Department of Energy Joint Genome Institute Introduces IMG Version 2.1

CLC bio Launches CLC Bioinformatics Cell

Accelrys Unveils Imaging Software for SciTegic Pipeline Pilot

CLC bio Launches the Pioneering Customizable Bioinformatics Suite

Jalaja Technologies and The Institute of Genomics & Integrative Biology Devise GENO-CLUSTER Bioinformatics Software

CLC Bio Launches Four New Bioinformatics Software

Insightful Develops Bioinformatics Software for National Cancer Institute

3rd Millennium Unveils 2.0 ARDAS™ Software

GeneBio Introduces Phenyx 2.1 for Proteomics MS Data Analysis

BioWisdom Unveils SRS 8.2

INCOGEN Releases Version 3.3 of VIBE Data Pipelining Software for Bioinformatics

INCOGEN Introduces VIBE 3.1 Bioinformatics Data Pipelining Software

InforSense Launches InforSense KDE, InforSense BioSense Grid on Mac OS X V 10.4

Massively Parallel Technologies Completes Early Beta Testing of Bioinformatics Tool

Kinexus Announces Launch of KiNET Functional Proteomics Database

Agilent Technologies Launches Search Tool for Cytoscape Bioinformatics Platform

Ocimum Develops DNA Analysis Software

Apple Computer Launches Bioinformatics Cluster

EBI, Swiss Institute of Bioinformatics and Georgetown University Launch UniProt

5. Recent Industry Activity

InforSense and Crosslinks Ink Research Alliance

Chemizon and KRIBB Team Up to establish a New Biotech Company

BIOBASE Establishes a New Japanese Subsidiary, Nihon BIOBASE KK

Applied Biosystems Ropes in Geospiza® and GenomeQuest into Software Development Community for Developing Advanced Bioinformatics Tools

InforSense and BioWisdom Enter Bioinformatics Agreement

Gene Logic Completes Sale of its Genomic assets to Ocimum Biosolutions

SGI Develops World's Largest FPGA Supercomputer

Progeniq Enrolls into BioIT Alliance

Applied Biosystems Launches Software Development Community for Advancing Bioinformatics Applications for its SOLiD™ System

Agilent and Strand Life Sciences Ink Software Development Agreement

Cell Therapeutics to Acquire Systems Medicine

SGI Enrolls into Bio-IT Alliance

GenoLogic Joins Illumina’s Bioinformatics Program, Illumina Connect

InApp Software to Establish a Bioinformatics Society in India

Agilent Technologies Partners with Gene Logic for Research and iscovery Projects

Thomson, Corp. Acquires Unleashed Informatics

iHorizons Signs R&D Agreement With AREA Science Park and Cluster in Biomedicine

GeneBio’s Software to be Integrated into Biozentrum’s Proteomics Cluster

BioWisdom Signs Agreement with the European Bioinformatics Institute to Deliver SRS 8.2

Genencor Licenses ERGO™ Software to Integrated Genomics

Intelligent Business Systems Signs MOU to Establish a Biotechnology Solutions Venture in India

Nonlinear Dynamics and Agilent Sign Co-Marketing Deal

Agilent Technologies’ Bioinformatics Solution Enables Platforms’ Standardization at NCI

LION Bioscience Divests Bioinformatics Business to BioWisdom

Applied Biosystems Collaborates with GeneGo

BioWisdom and AstraZeneca Extend Partnership for Intelligence Networks

BioWisdom Extends SRS Licenses for Boehringer Ingelheim

Sheba and Weizmann Attain Licenses for Partek’s Genomics Suite Software

Sirna Gains Exclusive Worldwide License for miRNA Technology

HSARPA to Commence Bioinformatics and Assay Development Programme

Syngenta Selects InforSense® to Develop Bioinformatics Computational Platform

Stratagene Partners with Strand Life Sciences for Advanced Bioinformatics Software Tools

Nonlinear Dynamics Join Forces with Genedata Over Proteomics Research

RTI International Bags Bioinformatics Contracts from the National Institutes of Health's NCI

Cold Spring Harbor Lab Kicks off Bioinformatics Expansion

Iowa State Bags $3 Million IGERT Grant for Bioinformatics

AMITY, MASCON Announce Partnership for Bioinformatics R&D

BioTeam Teams Up InforSense to Develop Grid Computing Environment for Bioinformatics

Nonlinear and Water Corp Ink Agreement

Clarient Signs Bioinformatics Patent Licensing Agreement With HDC

Gene-IT to Develop Bioinformatics Technology

AstraZeneca Purchases License for Target Informatics Platform from Eidogen-Sertanty

SRI International Expands BioCyc Database Collection

JBRIC Selects United Device’s Grid MP

India’s TCS Introduces Bioinformatics Software

Japan’s Hitachi and the University of Tokyo Establish New Venture

Sun Microsystems Launches Bioinformatics Cluster

Sun Micro Establishes Medical Bioinformatics Center in India

Expression Analysis forms Alliance with InPharmix

W&G Offers Gene-Typing Service

Health Discovery Acquires Fractal Genomics

Celera Diagnostics Collaborates with Merck

IBM and NIE Launch NBL

Proteome Systems and CSIRO Team Up

Ocimum Signs Life Sciences Deal

Beckman Boosts up its Systems Biology Technologies

6. Focus on Select Players

3rd Millennium, Inc (US)

Accelrys, Inc. (US)

Affymetrix (US)

Agilent Technologies (US)

Applied Biosystems (US)

BioWisdom Ltd (UK)

Celera Group (US)

Gene Logic (US)

Geneva Bioinformatics S.A (Switzerland)

IBM Life Sciences (US)

InforSense Ltd (UK)

InPharmix Incorporated (US)

Invitrogen Corp.(US)

Kinexus Bioinformatics Corporation (Canada)

Nonlinear Dynamics Ltd (UK)

Rosetta Inpharmatics (US)

7. Global Market Perspective

Table 1: World Recent Past, Current & Future Market Analysis for Bioinformatics by Geographic Region - the US, Canada, Japan, Europe, Asia-Pacific and Rest of World Markets Independently Analyzed with Annual Sales Figures in US$ Million for Years 2000 through 2010 (includes corresponding Graph/Chart)

Table 2: World Long-term Projections for Bioinformatics by Geographic Region - the US, Canada, Japan, Europe, Asia-Pacific and Rest of World Markets Independently Analyzed with Annual Sales Figures in US$ Million for Years 2011 through 2015 (includes corresponding Graph/Chart)

Table 3: World 10-Year Perspective for Bioinformatics by Geographic Region - Percentage Breakdown of Dollar Sales for the US, Canada, Japan, Europe, Asia-Pacific and Rest of World for Years 2003, 2008 & 2012 (includes corresponding Graph/Chart)

Analytics by Product Segment

Table 4: World Recent Past, Current & Future Market Analysis for Software (Bioinformatics) by Geographic Region - the US, Canada, Japan, Europe, Asia-Pacific andRest of World Markets Independently Analyzed with Annual Sales Figures in US$ Million for Years 2000 through 2010 (includes corresponding Graph/Chart)

Table 5: World Long-term Projections for Software (Bioinformatics) by Geographic Region - the US, Canada, Japan, Europe, Asia-Pacific and Rest of World Markets Independently Analyzed with Annual Sales Figures in US$ Million for Years 2011 through 2015 (includes corresponding Graph/Chart)

Table 6: World 10-Year Perspective for Software (Bioinformatics) by Geographic Region - Percentage Breakdown of Dollar Sales for the US, Canada, Japan, Europe, Asia-Pacific and Rest of World for Years 2003, 2008 & 2012 (includes corresponding Graph/Chart)

Table 7: World Recent Past, Current & Future Market Analysis for Biocontent (Bioinformatics) by Geographic Region - the US, Canada, Japan, Europe, Asia-Pacific and Rest of World Markets Independently Analyzed with Annual Sales Figures in US$ Million for Years 2000through 2010 (includes corresponding Graph/Chart)

Table 8: World Long-term Projections for Biocontent (Bioinformatics) by Geographic Region - the US, Canada, Japan, Europe, Asia-Pacific and Rest of World Markets Independently Analyzed with Annual Sales Figures in US$ Million for Years 2011 through 2015 (includes corresponding Graph/Chart)

Table 9: World 10-Year Perspective for Biocontent (Bioinformatics) by Geographic Region - Percentage Breakdown of Dollar Sales for the US, Canada, Japan, Europe, Asia-Pacific and Rest of World for Years 2003, 2008 & 2012 (includes corresponding Graph/Chart)

Table 10: World Recent Past, Current & Future Market Analysis for Hardware (Bioinformatics) by Geographic Region - the US, Canada, Japan, Europe, Asia-Pacific and Rest of World Markets Independently Analyzed with Annual Sales Figures in US$ Million for Years 2000 through 2010 (includes corresponding Graph/Chart)

Table 11: World Long-term Projections for Hardware (Bioinformatics) by Geographic Region - the US, Canada, Japan, Europe, Asia-Pacific and Rest of World Markets Independently Analyzed with Annual Sales Figures in US$ Million for Years 2011 through 2015(includes corresponding Graph/Chart)

Table 12: World 10-Year Perspective for Hardware (Bioinformatics) by Geographic Region - Percentage Breakdown of Dollar Sales for the US, Canada, Japan, Europe, Asia-Pacific and Rest of World for Years 2003, 2008 & 2012 (includes corresponding Graph/Chart)

III. MARKET

1. The United States

A. Market Analysis

Outlook

Market Overview

Patents in Bioinformatics

Product Launches

Strategic Corporate Developments

Focus on Select Players

B. Market Analytics

Table 13: US Recent Past, Current & Future Market Analysis for Bioinformatics by Product Segment - Software, Biocontent and Hardware Markets IndependentlyAnalyzed with Annual Sales Figures in US$ Million for Years 2000 through 2010 (includes corresponding Graph/Chart)

Table 14: US Long-term Projections for Bioinformatics by Product Segment - Software, Biocontent and Hardware Markets Independently Analyzed with Annual Sales Figures in US$ Million for Years 2011 through 2015 (includes corresponding Graph/Chart)

Table 15: US 10-Year Perspective for Bioinformatics by Product Segment - Percentage Breakdown of Dollar Sales for Software, Biocontent and Hardware Markets for 2003, 2008 & 2012 (includes corresponding Graph/Chart)

2. Canada

A. Market Analysis

Outlook

Canadian Bioinformatics Industry

Strategic Corporate Developments

Kinexus Bioinformatics Corporation-Key Canadian Player

B. Market Analytics

Table 16: Canadian Recent Past, Current & Future Market Analysis for Bioinformatics by Product Segment - Software, Biocontent and Hardware Markets Independently Analyzed with Annual Sales Figures in US$ Million for Years 2000 through 2010 (includes corresponding Graph/Chart)

Table 17: Canadian Long-term Projections for Bioinformatics by Product Segment - Software, Biocontent and Hardware Markets Independently Analyzed with Annual Sales Figures in US$ Million for Years 2011 through 2015(includes corresponding Graph/Chart)

Table 18: Canadian 10-Year Perspective for Bioinformatics by Product Segment Percentage Breakdown of Dollar Sales for Software Biocontent and Hardware Markets for 2003, 2008 & 2012 (includes corresponding Graph/Chart)

3. Japan

A. Market Analysis

Overview

An Update on Japanese Bioinformatics Industry

JbiC Drives Japanese Bioinformatics Industry

Strategic Corporate Developments

B. Market Analytics

Table 19: Japanese Recent Past, Current & Future Market Analysis for Bioinformatics by Product Segment - Software, Biocontent and Hardware Markets Independently Analyzed with Annual Sales Figures in US$ Million for Years 2000 through 2010 (includes corresponding Graph/Chart)

Table 20: Japanese Long-term Projections for Bioinformatics by Product Segment - Software, Biocontent and Hardware Markets Independently Analyzed with Annual Sales Figures in US$ Million for Years 2011 through 2015(includes corresponding Graph/Chart)

Table 21: Japanese 10-Year Perspective for Bioinformatics by Product Segment - Percentage Breakdown of Dollar Sales for Software, Biocontent and Hardware Markets for 2003, 2008 & 2012 (includes corresponding Graph/Chart)

4. Europe

A. Market Analysis

Outlook

European Bioinformatics Market

Major Public Science Institutes

Regulatory Environment

B. Market Analytics

Table 22: European Recent Past, Current & Future Market Analysis for Bioinformatics by Geographic Region -France, Germany, Italy, UK and Rest of Europe Independently Analyzed with Annual Sales Figures in US$ Million for Years 2000 through 2010 (includes corresponding Graph/Chart)

Table 23: European Long-term Projections for Bioinformatics by Geographic Region -France, Germany, Italy, UK and Rest of Europe Independently Analyzed with Annual Sales Figures in US$ Million for Years 2011 through 2015(includes corresponding Graph/Chart)

Table 24: European 10-Year Perspective for Bioinformatics by Geographic Region - Percentage Breakdown of Dollar Sales for France, Germany, UK, Italy and Rest of Europe for Years 2003, 2008 & 2012 (includes corresponding Graph/Chart)

Table 25: European Recent Past, Current & Future Market Analysis for Bioinformatics by Product Segment - Software, Biocontent and Hardware Markets Independently Analyzed with Annual Sales Figures in US$ Million for Years 2000 through 2010 (includes corresponding Graph/Chart)

Table 26: European Long-term Projections for Bioinformatics by Product Segment - Software, Biocontent and Hardware Markets Independently Analyzed with Annual Sales Figures in US$ Million for Years 2011 through 2015 (includes corresponding Graph/Chart)

Table 27: European 10-Year Perspective for Bioinformatics by Product Segment - Percentage Breakdown of Dollar Sales for Software, Biocontent and Hardware Markets for 2003, 2008 & 2012 (includes corresponding Graph/Chart)

4a. France

Market Analysis

Table 28: French Recent Past, Current & Future Market Analysis for Bioinformatics by Product Segments - Software, Biocontent and Hardware Markets Independently Analyzed with Annual Sales Figures in US$ Million for Years 2000 through 2010 (includes corresponding Graph/Chart)

Table 29: French Long-term Projections for Bioinformatics by Product Segment - Software, Biocontent and Hardware Markets Independently Analyzed with Annual Sales Figures in US$ Million for Years 2011 through 2015 (includes corresponding Graph/Chart)

Table 30: French 10-Year Perspective for Bioinformatics by Product Segment - Percentage Breakdown of Dollar Sales for Software, Biocontent and Hardware Markets for 2003, 2008 & 2012 (includes corresponding Graph/Chart)

4b. Germany

Market Analysis

Table 31: German Recent Past, Current & Future Market Analysis for Bioinformatics by Product Segments -Software, Biocontent and Hardware Markets Independently Analyzed with Annual Sales Figures in US$ Million for Years 2000 through 2010 (includes corresponding Graph/Chart)

Table 32: German Long-term Projections for Bioinformatics by Product Segment - Software, Biocontent and Hardware Markets Independently Analyzed with Annual Sales Figures in US$ Million for Years 2011 through 2015 (includes corresponding Graph/Chart)

Table 33: German 10-Year Perspective for Bioinformatics by Product Segment - Percentage Breakdown of Dollar Sales for Software, Biocontent and Hardware Markets for 2003, 2008 & 2012 (includes corresponding Graph/Chart)

4c. The United Kingdom

A. Market Analysis

Overview

Research Entities

Product Launches

Strategic Corporate Developments

Key Players

B. Market Analytics

Table 34: UK Recent Past, Current & Future Market Analysis for Bioinformatics by Product Segment - Software, Biocontent and Hardware Markets Independently Analyzed with Annual Sales Figures in US$ Million for Years 2000 through 2010 (includes corresponding Graph/Chart)

Table 35: UK Long-term Projections for Bioinformatics by Product Segment - Software, Biocontent and Hardware Markets Independently Analyzed with Annual Sales Figures in US$ Million for Years 2011 through 2015 (includes corresponding Graph/Chart)

Table 36: UK 10-Year Perspective for Bioinformatics by Product Segment - Percentage Breakdown of Dollar Sales for Software, Biocontent and Hardware Markets for 2003, 2008 & 2012 (includes corresponding Graph/Chart)

4d. Italy

Market Analysis

Strategic Corporate Developments

Table 37: Italian Recent Past, Current & Future Market Analysis for Bioinformatics by Product Segments - Software, Biocontent and Hardware Markets Independently Analyzed with Annual Sales Figures in US$ Million for Years 2000 through 2010 (includes corresponding Graph/Chart)

Table 38: Italian Long-term Projections for Bioinformatics by Product Segment - Software, Biocontent and Hardware Markets Independently Analyzed with Annual Sales Figures in US$ Million for Years 2011 through 2015 (includes corresponding Graph/Chart)

Table 39: Italian 10-Year Perspective for Bioinformatics by Product Segment - Percentage Breakdown of Dollar Sales for Software, Biocontent and Hardware Markets for 2003, 2008 & 2012 (includes corresponding Graph/Chart)

4e. Rest of Europe

A. Market Analysis

Outlook

National Service Center for Bioinformatics in Netherlands

Key Player Review

Product Launches

Strategic Corporate Developments

B. Market Analytics

Table 40: Rest of Europe Market Analysis for Bioinformatics by Product Segment - Recent Past, Current & Future Market Analysis for Software, Biocontent and Hardware Markets Independently Analyzed with Annual Sales Figures in US$ Million for Years 2000 through 2010 (includes corresponding Graph/Chart)

Table 41: Rest of Europe Long-term Projections for Bioinformatics by Product Segment - Software, Biocontent and Hardware Markets Independently Analyzed with Annual Sales Figures in US$ Million for Years 2011 through 2015 (includes corresponding Graph/Chart)

Table 42: Rest of Europe 10-Year Perspective for Bioinformatics by Product Segment - Percentage Breakdown of Dollar Sales for Software, Biocontent and Hardware Markets for 2003, 2008 & 2012 (includes corresponding Graph/Chart)

5. Asia-Pacific

A. Market Analysis

Outlook

Bioinformatics in Asia-Pacific

India

Taiwan

Australia

Market Drivers

Market Inhibitors

Singapore

Korea

Product Innovations

Strategic Corporate Developments

B. Market Analytics

Table 43: Asia-Pacific Market Analysis for Bioinformatics by Product Segment - Recent Past, Current & Future Analysis for Software, Biocontent and Hardware Markets Independently Analyzed with Annual Sales Figures in US$ Million for Years 2000 through 2010 (includes corresponding Graph/Chart)

Table 44: Asia-Pacific Long-term Projections for Bioinformatics by Product Segment - Software, Biocontent and Hardware Markets Independently Analyzed with Annual Sales Figures in US$ Million for Years 2011 through 2015(includes corresponding Graph/Chart)

Table 45: Asia-Pacific 10-Year Perspective for Bioinformatics by Product Segment - Percentage Breakdown of Dollar Sales for Software, Biocontent and Hardware Markets for 2003, 2008 & 2012 (includes corresponding Graph/Chart)

6. Rest of World

A. Market Analysis

Outlook

Strategic Corporate Developments

B. Market Analytics

Table 46: Rest of World Market Analysis for Bioinformatics by Product Segment - Recent Past, Current & Future Analysis for Software, Biocontent and Hardware Markets Independently Analyzed with Annual Sales Figures in US$ Million for Years 2000 through 2010 (includes corresponding Graph/Chart)

Table 47: Rest of World Long-term Projections for Bioinformatics by Product Segment - Software, Biocontent and Hardware Markets Independently Analyzed with Annual Sales Figures in US$ Million for Years 2011 through 2015 (includes corresponding Graph/Chart)

Table 48: Rest of World 10-Year Perspective for Bioinformatics by Product Segment - Percentage Breakdown of Dollar Sales for Software, Biocontent and Hardware Markets for 2003, 2008 & 2012 (includes corresponding Graph/Chart)

IV. COMPETITIVE LANDSCAPE

Abstract

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