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Biomarker SOPs: Getting Optimum Value from Your Biomarker Programs

Published by: CHI Insight Pharma Reports

Published: Jan. 1, 2007 - 166 Pages


Table of Contents


Chapter 1. Introduction

1.1. Historical Perspective on Biomarkers in Pharma

Terminology Recently Evolved

A Shift in Emphasis

1.2. Current Status of Biomarkers in Pharma

1.3. Planning and Implementation Issues

Strategic Planning Issues

Tactical Planning Issues

Organizational Considerations

Business Considerations

1.4. Precommercial, Collaborative Biomarker Work

The Biomarkers Consortium

Consortium Projects

European Union Consortium

1.5. Exploratory Investigational New Drug Applications and the Pipeline Paradigm


Chapter 2 BIOMARKER STRATEGIC PLANNING

Biomarkers Can Serve Multiple Purposes

2.1. Planning for Biomarkers

Variations among Therapeutic Areas

2.2. Biomarkers for Stages along the Pipeline

Prediscovery

Discovery

Early Clinical Development

Late-Stage Clinical Development

Efficacy Biomarkers

2.3. Postmarketing

2.4. The Biomarker Strategic Plan


Chapter 3. BIOMARKER IMPLEMENTATION PLANNING

3.1. Biomarker Validation

Pre-analytical Considerations

Method Development

Exploratory Method Validation

Advanced Method Validation

In-Study Validation

3.2. Industry Experts’ Comments on Biomarker Guidelines, Standard Operating Procedures, and Validation

3.3. In-House versus Outsourced Biomarker Identification and Method Development

The Biomarkers Consortium

Example of Biomarker Implementation


Chapter 4. ORGANIZATIONAL ISSUES

Translational Medicine

Centralization vs. Decentralization

4.1. Explicit Model

4.2. Implicit Model

4.3. Hybrid Model


Chapter 5. THE BIOMARKER BUSINESS CASE

5.1. Comments on Business Analysis from Industry Experts

Cost for One, Benefit for Another


Chapter 6. CASE STUDY IN BIOMARKER PLANNING AND IMPLEMENTATION

6.1. Biomarker Typology and Linkage to Outcome: Target, Mechanism, and Outcome Biomarkers

6.2. Validation Typology

6.3. Stages in the Biomarker Life Cycle: Pathfinding, Research, and Development

6.4. Business Considerations: Expense of Development vs. Cost of Wrong Decision

6.5. Biomarker Best Practices: Optimize, Maximize, and Balance

6.6. Biomarker Validation

6.7. Minimally Acceptable Criteria



Chapter 7. RESULTS OF BIOMARKERS SURVEY

Results and analysis of a Web survey conducted in October 2006


Chapter 8. OBSERVATIONS AND CONCLUSIONS


APPENDIX

Interviews with Industry Experts


Ernie Bush, PhD, Director New Initiatives, Cambridge Healthtech Associates


Claudio Carini, MD, PhD, Vice President, Translational Medicine, Development & Regulatory Services, MDS Pharma Services


Cynthia Cheesman, Assistant Vice President, Preclinical Project Management, Wyeth


Nicholas Dracopoli, PhD, Vice President, Clinical Discovery Technologies, Bristol-Myers Squibb


Darrick Fu, MBA, Associate Vice President for Science and Regulatory Affairs, PhRMA


Orest Hurko, MD, Assistant Vice President, Translational Research, Wyeth


David S. Lester, PhD, New York Site Head, Pfizer Human Health Technologies, Global Clinical Technology—Pfizer Global Research and Development


Terry Lindstrom, PhD, Distinguished Research Fellow; Drug Disposition, Global Pharmacokinetics, and Toxicology, Eli Lilly & Co.


Bruce H. Littman, MD, Global Head of Translational Medicine, Pfizer


Michael Stocum, MS, Managing Director, Personalized Medicine Partners


Stephen A. Williams, MD, PhD, Vice President and Worldwide Head of Clinical Technology, Pfizer


References


Company Index with Web Sites




TABLES

Table 1.1. GlaxoSmithKline’s Biomarker Typology

Table 6.1. Purpose versus Characteristics of Diagnostics Used as Screening Tools

Table 6.2. Biomarker Validation Attributes




FIGURES

Figure 6.1. Evolution of a New Biomarker

Figure 7.1. Survey: Respondents by Sector

Figure 7.2. Survey: Respondents by Position

Figure 7.3. Survey: Respondents by Stage of Work

Figure 7.4. Survey: Respondents by Research Focus

Figure 7.5. Survey: Involvement with Biomarker Planning and Discovery

Figure 7.6. Survey: View toward Precommercial Biomarker Development

Figure 7.7. Survey: View toward Standard Operating Procedures or Guidelines for Biomarker Development

Figure 7.8. Survey: View toward Outsourcing Biomarker Discovery and Development

Figure 7.9. Survey: Reasons for Biomarker Outsourcing

Figure 7.10. Survey: Types of Biomarkers Used

Figure 7.11. Survey: Stage at Which Biomarkers Are Used

Figure 7.12. Survey: Fiscal 2007 Biomarker-Related Budgetary Plans

Figure 7.13. Survey: Three-Year Biomarker-Related Budgetary Plans

Abstract

As biomarkers have grown in importance throughout the pharma R&D cycle, managers have moved from informal, intuitive ways of dealing with biomarker discovery and implementation to more formal procedures. In all pharmaceutical companies, standard operating procedures (SOPs) for planning, implementing, and employing biomarkers remain a work in progress, continually evolving as still-scarce outcomes data from biomarker-driven programs becomes available.

Based on extensive interviews with senior managers and thought leaders, Biomarker SOPs: Getting Optimum Value from Your Biomarker Programs addresses four primary elements in planning and deploying biomarkers:
  • Strategic planning for biomarkers in discovery and development
  • Tactical planning for the implementation of biomarkers in R&D programs
  • Organizational structures for biomarker implementation
  • Approaches to risk/cost-benefit analysis of biomarker programs
For instance, strategic planning for biomarkers attempts to address issues such as whether a clinical measurement will suffice, whether an existing validated biomarker can do the job, or whether a biomarker must be discovered and a method for its measurement must be developed and validated. Although big pharma companies differ in the methods and timing for biomarker strategic planning, they generally start planning very early in the discovery process. In some cases, planning and implementation for efficacy-related biomarkers begin before a final disease target has been determined. Since getting a new biomarker on-line can take a year or more, planning for biomarkers to be used in early development needs to begin as soon as strategic issues can be clarified.

Biomarker SOPs: Getting Optimum Value from Your Biomarker Programs delivers the following value-added insight and analysis into biomarker planning:
  • A survey of 33 senior managers involved in biomarker discovery, development, and application at pharmaceutical and biotech companies. The survey reveals in easy-to-scan charts their practices, plans and views about various aspects of biomarker planning and implementation.
  • An analysis of 3 basic organizational models for pursuing biomarkers: The Explicit Model, the Implicit Model, and the Hybrid Model. The report illustrates each model with detailed examples from industry.
  • The decision process for developing biomarkers in-house or through outsourcing, with examples and case studies from industry.
  • A full examination of each element in a tactical biomarker plan, including: the means for biomarker acquisition (if possible), biomarker discovery (if necessary), method development, and biomarker validation. In particular, the report describes the “fit-for-purpose” concept of biomarker validation.
When biomarker timelines and costs start to mount, some level of business analysis can be beneficial. This can take the form of ROI analysis, cost/risk-vs-benefit analysis, or both. Pfizer is one of the few pharma companies to provide its project teams with a formal software tool for ROI analysis and to encourage its use. This and other biomarker-related efforts under way at Pfizer are presented in a compelling case study of how one big pharma entity is attempting to implement biomarker SOPs.

Biomarkers have moved beyond being used merely to assuage scientific curiosity. They are increasingly being used to answer specific questions that provide critical decision-support data as a compound moves down the pipeline and soaks up more and more R&D dollars. Thus, biomarkers are being used to measure clinical response to a drug, to quantify drug-target interactions, to demonstrate the relevance of a molecule to the pathophysiology of a particular disease, and as safety indicators that can identify subjects who might react adversely to a drug. The rising importance of biomarkers underscores the need for ways to rationally plan for their use. Biomarker SOPs: Getting Optimum Value from Your Biomarker Programs is a must-read for managers charged with making biomarkers pay off for their company.

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