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Clinical Proteomics: Rethinking Approaches to Protein Biomarker Discovery

Published by: Decision Resources

Published: May. 31, 2007 - 26 Pages


Table of Contents


Executive Summary

Strategic Considerations

Stakeholder Implications

The State of the Art

Key Proteomics Technologies

Two-Dimensional Polyacrylamide Gel Electrophoresis

Mass Spectrometry

Antibody Microarrays

Microfluidics

Label-Free Technologies

The Pipeline Problem: Why Is Discovery Slowing?

Challenges of Discovering Protein Biomarkers

The Imperfect Process of Discovering Protein Biomarkers

From Biomarker Discovery to Diagnostic Development

Expanding Discovery-Based Research

Hypothesis-Based Approach

Engineering Better Biomarkers

Systems Biology

Major Players in Protein Biomarker Discovery

Bayer Pharmaceuticals

Eli Lilly

Novartis

Pfizer

Roche

Sidebar: Eli Lilly’s Biomarker Development Strategy for Sepsis—A Case Study

Outlook for Protein Biomarkers

Rethinking Discovery-Based Research

Looking Beyond Pattern-Only Discovery

Multiplexing Leads the Way

Supportive Regulatory Environment: The FDA Process

Building Strong Collaborations

Tables

1. Select Commercially Available Protein-Based Diagnostics

2. Proteomics Business Models

3. Key Proteomics Technology Vendors and Service Providers

4. Emerging Players in Protein Biomarker Discovery

5. FDA Critical Path Opportunities for Biomarkers

6. Considerations for Choosing a Diagnostic Development Partner

Figures

1. The 1,175 Identifi ed Proteins of the Human Plasma Proteome

2. Number of Novel Protein Analytes in FDA-Approved Diagnostic Tests, 1994-2002

3. Sensitivities and Specifi cities of Select FDA-Approved Protein Biomarkers

4. Alternate Approach: Suggested Technology Workfl ow for Developing Protein Biomarkers

5. Drug-Device Codevelopment Process: Key Steps During Development

Abstract

Protein biomarkers are appealing to drug developers because they can be used early in the drug research pipeline, which allows early elimination of ineffective or toxic compounds. Although the promise of these biomarkers is clear, the path to successful implementation of protein biomarkers is not. Perhaps the discovery-based approach is not the best way to tap the potential of protein biomarkers.

Get the Answers You Need to Shape Your Strategy
Despite scientifi c advancements, protein biomarker discovery is slowing. What are the challenges facing companies and researchers that are hindering the discovery process?

Researchers are rethinking the discovery-based approach. What other options and innovations are available? What companies are leading the way?

The future of protein biomarkers is extremely promising for a multitude of businesses. What benefi ts are available for technology vendors, Big Pharma companies, researchers, and regulatory agencies? Can collaboration between any or all of these stakeholders ensure the success of protein biomarkers?

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